Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015947193.1_cds_XP_016488999.1_79568
CDS Infomation

[gene=LOC107808955] [db_xref=GeneID:107808955] [protein=PHD finger protein MALE STERILITY 1-like] [protein_id=XP_016488999.1] [location=complement(join(5911..7279,7767..8091,8939..9239))] [gbkey=CDS]
Sequence

ATGTCGAATTTAGATCTAAGTGGATCAAAGAAAAGGAAGAGAAATGACCAAAGGGTTTTT
AAGTTCAAGACTTTTGGTGAACAAGGGTTTCCTACAGAGTTCATAGAGTGTAACTTTGAA
CAAAATGTTAAACTTCTTTTGGAATTTGCACAGCAAGAAGAAAATGGTGATCATGCCATG
GCTATCTGGTCATTTCAGCTGGAAGTTCATCGACATCCGCCGATGCATATATTCCTGTTT
GTTGTTGAAGAACCAGTTGAATTGTCCCTCAATCCTCATTGCAAACACTGTCAATATATA
GGCTGGGGAAACCATCTGATCTGCAACAAGAAGTACCATTTCCTGTTGCCTTCAAAGGAC
ACAGTAGCAGCTTGTTTGAGGTATGATAATCAAGGAGCTGGCAGTAACCAAAACACTTAT
AATACAAATGGTGGTGCAGTAGTAGGAGAAATTAGAAGTAAGTCGTCGAATTTGATTGAA
TTAGAGGGTCATATAATGCATGGTGTGTTTCACTCTAATGGTTTTGGGCATTTGCTATGT
ATCAATGGTTTGGAGACTGGTTCTGACTTGCCTGGCCACTCTATCATGGACTTCTGGGAT
CGCCTTTGCATTGGACTACGTGCAAGGAAAGTGAGCTTAAGGGATATCTCACAGAAGAAA
GGCATGGATCTAAGGCTACTCAACACAGTGGCCTATGGTGAGCCATGGTTTGGACATTGG
GGCTATAGATTTGGCCGTGGAAGCTTTGGAGTAACTCAAGAAACATATCAAAGTGCAATC
AATGCCATACAAAACATGCCATTAGCCTTATTAGCACATCACATAAATAATCATGAGATA
TTAACAGTGTTATCAAGGTACCAAATGTTATCAGGTCACACATTAGTCACACTTTGTGAC
ACCTTTCATTTCATGCTGGAGCTCAAATCGCGAATTCCAAAAGAAAGTAACCTTAGCTCG
TGTTACCCTGGGCTATTGGTAGATAACACATGTAGATGGTCACCTAAACGCGTTGAGATG
GCTATTAGGGTTGTTGTGGAAGCCCTAAAAAGAGCTGAATCGCGGTGGATTTCTAGGCAA
GAGGTTCGTGATGCTGCTCGTGCTTACATTGGTGACACTGGATTACTAGATTTCGTGCTC
AAGTCATTGGGAAATCATATTGTTGGGAAGTATTTAGTTCGTCGATGCTTAAATCCAGTA
ACCAAAGTTTTGGAATATTGTTTAGAGGACATATCTAAAGCATTCCCTAAGCATGATCAA
GGTTTTTGGGTTAATGACTCAAAAGGGAATCAACAATACAAAATTACATGGGTTCAACTT
ATGAAGGACATATATTTCTTGTACAAGAATATCCTAAAAGAGATCAAGGGAATGCCTAAT
TACACAGGCATCTTTGCTGCAATCCCAACAACTTCTCGAATAATCTTGGACGCGAAATAC
TTCCTCAAGGAATATAAAGGGGAGTCCGATTCAAGAATTGAAGTTGATAAATCAAAGATT
TATTGTGCAATTATGTTGGTAACCAAGAATGGATTTGGGGTTGAAGAAAAAGTAATGACC
CCATTTGAGTGCTTCATATTAAGAAAAGATGTCACATTTGATGAGCTAATGATTGAAGTG
GAAAGAACATTTGGGAATATCTATTGGGGACTAAGGAACTTTGCCATAAGATCAATTAAC
AATTTGAGTCCTATTATTGGTACAGAATTGTTTTTTAATGTGATGAAACCTGGAAACAAG
ATTGTTTTAGGAGGGGTTATGTCCAATATTGATCATAATAATATAGGGATATTTGAAGGA
ATTAAGGATAATATTGTTGTGGATTGCCTTTGTGGGACAAAAGACGAAGATGGTGAAAGG
ATGGTTTGTTGTGATATTTGTGAAGTTTGGCAACACACTCGTTGTGTTAATATCCCAAAC
CAAGAAGCTATTCCAGATATATTCCTTTGTAGTAAGTGTGAGCAAGATATCCTACAATTT
CCTTCACTGCCTTAG

Peptide Sequence

PEP ID

XP_016488999.1
PEP Infomation

PREDICTED: PHD finger protein MALE STERILITY 1-like [Nicotiana tabacum]
Sequence

MSNLDLSGSKKRKRNDQRVFKFKTFGEQGFPTEFIECNFEQNVKLLLEFAQQEENGDHAM
AIWSFQLEVHRHPPMHIFLFVVEEPVELSLNPHCKHCQYIGWGNHLICNKKYHFLLPSKD
TVAACLRYDNQGAGSNQNTYNTNGGAVVGEIRSKSSNLIELEGHIMHGVFHSNGFGHLLC
INGLETGSDLPGHSIMDFWDRLCIGLRARKVSLRDISQKKGMDLRLLNTVAYGEPWFGHW
GYRFGRGSFGVTQETYQSAINAIQNMPLALLAHHINNHEILTVLSRYQMLSGHTLVTLCD
TFHFMLELKSRIPKESNLSSCYPGLLVDNTCRWSPKRVEMAIRVVVEALKRAESRWISRQ
EVRDAARAYIGDTGLLDFVLKSLGNHIVGKYLVRRCLNPVTKVLEYCLEDISKAFPKHDQ
GFWVNDSKGNQQYKITWVQLMKDIYFLYKNILKEIKGMPNYTGIFAAIPTTSRIILDAKY
FLKEYKGESDSRIEVDKSKIYCAIMLVTKNGFGVEEKVMTPFECFILRKDVTFDELMIEV
ERTFGNIYWGLRNFAIRSINNLSPIIGTELFFNVMKPGNKIVLGGVMSNIDHNNIGIFEG
IKDNIVVDCLCGTKDEDGERMVCCDICEVWQHTRCVNIPNQEAIPDIFLCSKCEQDILQF
PSLP

Transcript Sequence

Gene sequence data has not been registered.